miRBase entry: aca-let-7c-3

Stem-loop aca-let-7c-3


Accession
MI0029346
Description
Anolis carolinensis aca-let-7c-3 precursor miRNA

Literature search
1 open access papers mention aca-let-7c-3
(1 sentences)

Sequence

gcauccagguUGAGGUAGUAGGUUGUAUGGUUuagaauuacaccaagggagauaaCUGUACAACCUCCUAGCUUUCCuugggucuugcaca
(((((((((..(((.(((.(((((((((((((.....................))))))))))))).))).)))..))))))...)))...

Structure
---   ---      uU   G   U             uagaauuac 
   gca   uccagg  GAG UAG AGGUUGUAUGGUU         a
   |||   ||||||  ||| ||| |||||||||||||         c
   cgu   ggguuC  UUC AUC UCCAACAUGUCaa         c
aca   ucu      CU   G   C             uagagggaa 


Annotation confidence Not enough data
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Genome context
CM000943.1: 2619225-2619315 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-let-7c-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-let-7c-5p

Accession MIMAT0021696
Description Anolis carolinensis aca-let-7c-5p mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUGGUU - 32
Evidence experimental
Illumina [1]

Mature aca-let-7c-3-3p

Accession MIMAT0037557
Description Anolis carolinensis aca-let-7c-3-3p mature miRNA
Sequence 56 - CUGUACAACCUCCUAGCUUUCC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196