miRBase entry: aca-mir-133a-3

Stem-loop aca-mir-133a-3


Accession
MI0029353
Description
Anolis carolinensis aca-mir-133a-3 precursor miRNA

Literature search
2 open access papers mention aca-mir-133a-3
(8 sentences)

Sequence

ugugucccuagggcugguaaaaaggaaccagaucgacuggcaacuggaUUUGGUCCCCUUCAACCAGCUGugguggc
...(((.(((.(((((((..((.((.((((((((.(........).)))))))).)).))..))))))).))).)))

Structure
ugu   c   g       aa  a  a        g cug 
   guc cua ggcuggu  aa gg accagauc a   g
   ||| ||| |||||||  || || |||||||| |    
   cgg ggu UCGACCA  UU CC UGGUUUag u   c
---   u   G       AC  C  C        g caa 


Annotation confidence Not enough data
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Genome context
GL343308.1: 91297-91373 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-133a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-133a-3p

Accession MIMAT0037566
Description Anolis carolinensis aca-miR-133a-3p mature miRNA
Sequence 49 - UUUGGUCCCCUUCAACCAGCUG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196