miRBase entry: cpi-let-7a-3

Stem-loop cpi-let-7a-3

Accession

MI0029373

Description

Chrysemys picta cpi-let-7a-3 precursor miRNA

Sequence

guccuuuggggUGAGGUAGUAGGUUGUAUAGUUuuaggguuauacccugccugucagauaaCUAUACAAUCUACUGUCUUUccugaaguggcu
(((((((((((.(((((((((((((((((((((.((((((...))))))..........))))))))))))))))))))))))))))).))).

Structure

-   -        U                     ---------u      u 
 guc cuuugggg GAGGUAGUAGGUUGUAUAGUU          uagggu  
 ||| |||||||| |||||||||||||||||||||          |||||| a
 cgg gaaguccU UUCUGUCAUCUAACAUAUCaa          guccca  
u   u        -                     uagacugucc      u

Annotation confidence Not enough data

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Genome context

KK088200.1: 3680143-3680235 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-let-7a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7a-5p

Accession	MIMAT0037594
Description	Chrysemys picta cpi-let-7a-5p mature miRNA
Sequence	12 - UGAGGUAGUAGGUUGUAUAGUU - 33
Evidence	experimental Illumina [1]

Mature cpi-let-7a-3p

Accession	MIMAT0037595
Description	Chrysemys picta cpi-let-7a-3p mature miRNA
Sequence	62 - CUAUACAAUCUACUGUCUUU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196