miRBase entry: cpi-let-7e

Stem-loop cpi-let-7e


Accession
MI0029379
Description
Chrysemys picta cpi-let-7e precursor miRNA


Sequence

guccuugaggcUGAGGUAGUAGAUUGAAUAGUUguggaguccuacccucccuuugagcuaaCUAUACAAUCUACUGUCUUUccuaaggaga
.(((((.(((..((((((((((((((.((((((((((((.......))))......)).)))))).)))))))))))))).))))))))..

Structure
-g     g   cU              A      -  ------    uc 
  uccuu agg  GAGGUAGUAGAUUG AUAGUU gu      ggag  c
  ||||| |||  |||||||||||||| |||||| ||      ||||  u
  aggaa ucc  UUCUGUCAUCUAAC UAUCaa cg      ccuc  a
ag     -   -U              A      u  aguuuc    cc 


Annotation confidence Not enough data
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Genome context
chr4: 2386096-2386186 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-let-7e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-let-7e-5p

Accession MIMAT0037604
Description Chrysemys picta cpi-let-7e-5p mature miRNA
Sequence 12 - UGAGGUAGUAGAUUGAAUAGUU - 33
Evidence experimental
Illumina [1]

Mature cpi-let-7e-3p

Accession MIMAT0037605
Description Chrysemys picta cpi-let-7e-3p mature miRNA
Sequence 62 - CUAUACAAUCUACUGUCUUU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196