miRBase entry: cpi-mir-7a-2

Stem-loop cpi-mir-7a-2


Accession
MI0029388
Description
Chrysemys picta cpi-mir-7a-2 precursor miRNA


Sequence

uggccccgucccuuaUGGAAGACUAGUGAUUUUGUUguucuauagcucaucucaugaCAACAAGUCACAGUCUGCCUUauggugcauggccuccu
.((((..((.((.((.((.(((((.(((((((.((((((................)))))))))))))))))).)).)).)).))..))))....

Structure
---u    cc  c  u  U  A     A       U      cuauagc 
    ggcc  gu cc ua GG AGACU GUGAUUU GUUguu       u
    ||||  || || || || ||||| ||||||| ||||||        
    ccgg  cg gg aU CC UCUGA CACUGAA CAACag       c
uccu    ua  u  u  U  G     -       -      uacucua 


Annotation confidence Not enough data
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Genome context
KK088241.1: 3107639-3107733 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-7a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-7a-5p

Accession MIMAT0037617
Description Chrysemys picta cpi-miR-7a-5p mature miRNA
Sequence 16 - UGGAAGACUAGUGAUUUUGUU - 36
Evidence experimental
Illumina [1]

Mature cpi-miR-7a-2-3p

Accession MIMAT0037619
Description Chrysemys picta cpi-miR-7a-2-3p mature miRNA
Sequence 58 - CAACAAGUCACAGUCUGCCUU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196