miRBase entry: cpi-mir-10a

Stem-loop cpi-mir-10a


Accession
MI0029395
Description
Chrysemys picta cpi-mir-10a precursor miRNA


Sequence

augcaucugucuucuauaugUACCCUGUAGAUCCGAAUUUGUguaaaggaaauugugUCACAAAUUCGUAUCUAGGGGaauauguaguugacacaaacacuac
.......((((..((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))..))))..........

Structure
---augcauc    uu        A    G     C          uaaagg 
          uguc  cuauaugU CCCU UAGAU CGAAUUUGUg      a
          ||||  |||||||| |||| ||||| ||||||||||      a
          acag  gauguaua GGGG AUCUA GCUUAAACAC      a
caucacaaac    uu        a    -     U          Uguguu 


Annotation confidence Not enough data
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Genome context
KK088207.1: 2588271-2588373 [+]

Database links

Mature cpi-miR-10a-5p

Accession MIMAT0037625
Description Chrysemys picta cpi-miR-10a-5p mature miRNA
Sequence 21 - UACCCUGUAGAUCCGAAUUUGU - 42
Evidence experimental
Illumina [1]

Mature cpi-miR-10a-3p

Accession MIMAT0037626
Description Chrysemys picta cpi-miR-10a-3p mature miRNA
Sequence 58 - UCACAAAUUCGUAUCUAGGGG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196