miRBase entry: cpi-mir-16a

Stem-loop cpi-mir-16a


Accession
MI0029400
Description
Chrysemys picta cpi-mir-16a precursor miRNA


Sequence

cagcaguacauUAGCAGCACGUAAAUAUUGGCGuuaacucuguaaauaucuCCAGUAUUAACUGUGCUGCUGAaguaaagu
..((..(((.((((((((((((.((((((((.(................).)))))))).)).)))))))))).)))..))

Structure
ca  ag   a          -  A        C uuaacuc 
  gc  uac uUAGCAGCAC GU AAUAUUGG G       u
  ||  ||| |||||||||| || |||||||| |        
  ug  aug AGUCGUCGUG CA UUAUGACC c       g
--  aa   a          U  A        u uauaaau 


Annotation confidence Not enough data
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Genome context
chr1: 56259040-56259120 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-16a-5p

Accession MIMAT0037634
Description Chrysemys picta cpi-miR-16a-5p mature miRNA
Sequence 12 - UAGCAGCACGUAAAUAUUGGCG - 33
Evidence experimental
Illumina [1]

Mature cpi-miR-16a-3p

Accession MIMAT0037635
Description Chrysemys picta cpi-miR-16a-3p mature miRNA
Sequence 52 - CCAGUAUUAACUGUGCUGCUGA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196