miRBase entry: cpi-mir-16c

Stem-loop cpi-mir-16c


Accession
MI0029401
Description
Chrysemys picta cpi-mir-16c precursor miRNA


Sequence

ucagcagugcucUAGCAGCACGUAAAUACUGGAGUuuaggauugccuagcugcUCUCCAGUAUUGCAUUGCUGCUuuaguguggcugg
.((((..((((..(((((((....((((((((((.(((((....))))).....))))))))))....)))))))..))))..)))).

Structure
u    ag    cU       CGUA          ----U     a 
 cagc  ugcu  AGCAGCA    AAUACUGGAG     uuagg u
 ||||  ||||  |||||||    ||||||||||     |||||  
 gucg  guga  UCGUCGU    UUAUGACCUC     gaucc u
g    gu    uu       UACG          Ucguc     g 


Annotation confidence Not enough data
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Genome context
KK088187.1: 4724903-4724990 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-16c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-16c-5p

Accession MIMAT0037636
Description Chrysemys picta cpi-miR-16c-5p mature miRNA
Sequence 13 - UAGCAGCACGUAAAUACUGGAGU - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-16c-3p

Accession MIMAT0037637
Description Chrysemys picta cpi-miR-16c-3p mature miRNA
Sequence 54 - UCUCCAGUAUUGCAUUGCUGCU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196