miRBase entry: cpi-mir-19b-2

Stem-loop cpi-mir-19b-2


Accession
MI0029406
Description
Chrysemys picta cpi-mir-19b-2 precursor miRNA


Sequence

aagauagugcugacuacagucAGUUUUGCAGGAUUGCAUUCCagcuuauuucaaacgcUGUGCAAAUCCAUGCAAAACUGacugugguugcauucauucg
..((((((((.(((((((((((((((((((((((((((...((((...........))))))).))))).)))))))))))))))))))))))).)))..

Structure
aa   -     u                   -     -   UUC    uuau 
  gau agugc gacuacagucAGUUUUGCA GGAUU GCA   Cagc    u
  ||| ||||| ||||||||||||||||||| ||||| |||   ||||    u
  uua uuacg uuggugucaGUCAAAACGU CCUAA CGU   GUcg    c
gc   c     -                   A     A   ---    caaa 


Annotation confidence Not enough data
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Genome context
KK088187.1: 4591224-4591323 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpi-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-19b-3p

Accession MIMAT0037645
Description Chrysemys picta cpi-miR-19b-3p mature miRNA
Sequence 59 - UGUGCAAAUCCAUGCAAAACUG - 80
Evidence experimental
Illumina [1]

Mature cpi-miR-19b-2-5p

Accession MIMAT0037646
Description Chrysemys picta cpi-miR-19b-2-5p mature miRNA
Sequence 22 - AGUUUUGCAGGAUUGCAUUCC - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196