miRBase entry: cpi-mir-29a-2

Stem-loop cpi-mir-29a-2

Accession

MI0029421

Description

Chrysemys picta cpi-mir-29a-2 precursor miRNA

Sequence

aaucucucuuacacaggcUGACCGAUCUCUCUUGGUGUUCagaguuucaguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguagggggaaa
..((((.((((((((...((((((((.((...(((((((.(((.............))))))))))...)).)))))))))).))))))))))..

Structure

aa    u      -  ggc        C  UCU       C   guuuc 
  ucuc cuuaca ca   UGACCGAU UC   UGGUGUU aga     a
  |||| |||||| ||   |||||||| ||   ||||||| |||     g
  aggg ggaugu gu   AUUGGCUA AG   ACCACGA Ucu     u
aa    -      a  ---        A  UUU       -   guuuu

Annotation confidence Not enough data

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Genome context

chr4: 87775-87869 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-29a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-29a-3p

Accession	MIMAT0037669
Description	Chrysemys picta cpi-miR-29a-3p mature miRNA
Sequence	59 - UAGCACCAUUUGAAAUCGGUUA - 80
Evidence	experimental Illumina [1]

Mature cpi-miR-29a-2-5p

Accession	MIMAT0037670
Description	Chrysemys picta cpi-miR-29a-2-5p mature miRNA
Sequence	19 - UGACCGAUCUCUCUUGGUGUUC - 40
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196