miRBase entry: cpi-mir-34b

Stem-loop cpi-mir-34b


Accession
MI0029435
Description
Chrysemys picta cpi-mir-34b precursor miRNA


Sequence

gaaguaguguuugguuuguAGGCAGUGUAGUUAGCUGAUUGuauccaucucuuugcaAUCACUAACUUUACUGCCAUCaaaacaagacacagaauucc
(((...((((((.((((...(((((((.((((((.((((((((..........)))))))))))))).)))))))....)))).))))))....))).

Structure
-   -gua      g    -guA       U      C        ucca 
 gaa    guguuu guuu    GGCAGUG AGUUAG UGAUUGua    u
 |||    |||||| ||||    ||||||| |||||| ||||||||     
 cuu    cacaga caaa    CCGUCAU UCAAUC ACUAacgu    c
c   aaga      a    aCUA       U      -        uucu 


Annotation confidence Not enough data
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Genome context
KK083019.1: 1773044-1773141 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-34b-5p

Accession MIMAT0037694
Description Chrysemys picta cpi-miR-34b-5p mature miRNA
Sequence 20 - AGGCAGUGUAGUUAGCUGAUUG - 41
Evidence experimental
Illumina [1]

Mature cpi-miR-34b-3p

Accession MIMAT0037695
Description Chrysemys picta cpi-miR-34b-3p mature miRNA
Sequence 58 - AUCACUAACUUUACUGCCAUC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196