miRBase entry: cpi-mir-92c

Stem-loop cpi-mir-92c


Accession
MI0029440
Description
Chrysemys picta cpi-mir-92c precursor miRNA


Sequence

ccggucccuuucguucuaAGGUUGGGAGAGCUGUAAUUGgcaugacuauuuuucagaggCAUUGCACUCGUCCCGGCCGGAgucagaagggauuugag
..(((((((((.(((((..(((((((((((.((((((.(.(.(((.......)))..).)))))))))).)))))))))))).).)))))))))....

Structure
--cc         c -    aA        -   C      U g -a   cu 
    ggucccuuu g uucu  GGUUGGGA GAG UGUAAU G c  uga  a
    ||||||||| | ||||  |||||||| ||| |||||| | |  |||  u
    uuagggaag c gAGG  CCGGCCCU CUC ACGUUA C g  acu  u
gagu         a u    --        G   -      - g ag   uu 


Annotation confidence Not enough data
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Genome context
KK083007.1: 2872254-2872351 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-92c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-92c-5p

Accession MIMAT0037703
Description Chrysemys picta cpi-miR-92c-5p mature miRNA
Sequence 19 - AGGUUGGGAGAGCUGUAAUUG - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-92c-3p

Accession MIMAT0037704
Description Chrysemys picta cpi-miR-92c-3p mature miRNA
Sequence 60 - CAUUGCACUCGUCCCGGCCGGA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196