miRBase entry: cpi-mir-98

Stem-loop cpi-mir-98


Accession
MI0029443
Description
Chrysemys picta cpi-mir-98 precursor miRNA


Sequence

ggaUGAGGUAGUACGUUGUAUUGUUguggggucgggauucgugccccaaucagagauaaCAAUACAACUUACUACUUUCCc
(((..((((((((.((((((((((((((((((((.....)).))))))........)))))))))))).))))))))))).

Structure
-   UG        C            --------      -  g 
 gga  AGGUAGUA GUUGUAUUGUUg        uggggu cg g
 |||  |||||||| ||||||||||||        |||||| || a
 CCU  UUCAUCAU CAACAUAACaau        accccg gc u
c   --        U            agagacua      u  u 


Annotation confidence Not enough data
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Genome context
KK083246.1: 398069-398149 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-98-5p

Accession MIMAT0037708
Description Chrysemys picta cpi-miR-98-5p mature miRNA
Sequence 4 - UGAGGUAGUACGUUGUAUUGUU - 25
Evidence experimental
Illumina [1]

Mature cpi-miR-98-3p

Accession MIMAT0037709
Description Chrysemys picta cpi-miR-98-3p mature miRNA
Sequence 60 - CAAUACAACUUACUACUUUCC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196