miRBase entry: cpi-mir-122

Stem-loop cpi-mir-122


Accession
MI0029454
Description
Chrysemys picta cpi-mir-122 precursor miRNA


Sequence

cugccagagcugUGGAGUGUGACAAUGGUGUUUGuguccaaucuaucAAACGCCAUUAUCACACUAAAUagcuacuguuagaua
(((.(((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).))).)))...

Structure
---   c   -      GG       C           ugucc 
   cug cag agcugU  AGUGUGA AAUGGUGUUUG     a
   ||| ||| ||||||  ||||||| |||||||||||      
   gau guc ucgaUA  UCACACU UUACCGCAAAc     a
aua   u   a      AA       A           uaucu 


Annotation confidence Not enough data
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Genome context
KK088217.1: 528232-528315 [+]

Database links

Mature cpi-miR-122-5p

Accession MIMAT0037724
Description Chrysemys picta cpi-miR-122-5p mature miRNA
Sequence 13 - UGGAGUGUGACAAUGGUGUUUG - 34
Evidence experimental
Illumina [1]

Mature cpi-miR-122-3p

Accession MIMAT0037725
Description Chrysemys picta cpi-miR-122-3p mature miRNA
Sequence 48 - AAACGCCAUUAUCACACUAAAU - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196