miRBase entry: cpi-mir-125b-1

Stem-loop cpi-mir-125b-1


Accession
MI0029460
Description
Chrysemys picta cpi-mir-125b-1 precursor miRNA


Sequence

uguugcgccccucucaaUCCCUGAGACCCUAACUUGUGAuguuuagcuuuuaaauccACGGGUUAGGCUCUUGGGAGCugugaguugugcuuugacau
((((((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..))))...)))).

Structure
-    ---    cc   u  -a    U    C           Au     g 
 uguu   gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
 ||||   ||||  ||| ||  |||| |||| |||||||||||  ||||| u
 acag   cgug  gag gu  AGGG UUCU GGAUUGGGCAc  uaaau u
u    uuu    uu   u  CG    -    C           -c     u 


Annotation confidence Not enough data
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Genome context
KK088232.1: 2305474-2305571 [-]

Database links

Mature cpi-miR-125b-5p

Accession MIMAT0037730
Description Chrysemys picta cpi-miR-125b-5p mature miRNA
Sequence 18 - UCCCUGAGACCCUAACUUGUGA - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-125b-3p

Accession MIMAT0037731
Description Chrysemys picta cpi-miR-125b-3p mature miRNA
Sequence 58 - ACGGGUUAGGCUCUUGGGAGC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196