miRBase entry: cpi-mir-135-3

Stem-loop cpi-mir-135-3


Accession
MI0029478
Description
Chrysemys picta cpi-mir-135-3 precursor miRNA


Sequence

gcccucugcuguggucUAUGGCUUUUUAUUCCUAUGUGauugcguuuccuaacucAUGUAGGGCUAAAAGCCAUGGGcuacacagaggaca
..((((((.(((((((((((((((((...((((((((((....(((....)))))))))))))..)))))))))))))))))))))))...

Structure
-gc      c                 UAU          uugc   u 
   ccucug uguggucUAUGGCUUUU   UCCUAUGUGa    guu c
   |||||| |||||||||||||||||   ||||||||||    |||  
   ggagac acaucGGGUACCGAAAA   GGGAUGUAcu    caa c
aca      -                 -UC          ----   u 


Annotation confidence Not enough data
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Genome context
KK083035.1: 1088889-1088979 [-]

Database links

Mature cpi-miR-135-5p

Accession MIMAT0037754
Description Chrysemys picta cpi-miR-135-5p mature miRNA
Sequence 17 - UAUGGCUUUUUAUUCCUAUGUG - 38
Evidence experimental
Illumina [1]

Mature cpi-miR-135-3-3p

Accession MIMAT0037757
Description Chrysemys picta cpi-miR-135-3-3p mature miRNA
Sequence 56 - AUGUAGGGCUAAAAGCCAUGGG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196