miRBase entry: cpi-mir-146a

Stem-loop cpi-mir-146a


Accession
MI0029489
Description
Chrysemys picta cpi-mir-146a precursor miRNA


Sequence

guauucucagcuuUGAGAACUGAAUUCCAUGUGUUGuaauugaaucucugucagACCCAUGGGGCUCAGUUCUUCAgcuuggauaucu
((((((..((((..(((((((((.(((((((.(((......((...)).....))).))))))).))))))))).)))).))))))..

Structure
--      uc    uU         A       U   Guaauu  a 
  guauuc  agcu  GAGAACUGA UUCCAUG GUU      ga  
  ||||||  ||||  ||||||||| ||||||| |||      || u
  uauagg  ucgA  UUCUUGACU GGGGUAC CAg      cu  
uc      -u    -C         C       C   -acugu  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KK088198.1: 5094007-5094094 [+]

Database links

Mature cpi-miR-146a-5p

Accession MIMAT0037774
Description Chrysemys picta cpi-miR-146a-5p mature miRNA
Sequence 14 - UGAGAACUGAAUUCCAUGUGUUG - 36
Evidence experimental
Illumina [1]

Mature cpi-miR-146a-3p

Accession MIMAT0037775
Description Chrysemys picta cpi-miR-146a-3p mature miRNA
Sequence 55 - ACCCAUGGGGCUCAGUUCUUCA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196