miRBase entry: cpi-mir-148a

Stem-loop cpi-mir-148a


Accession
MI0029493
Description
Chrysemys picta cpi-mir-148a precursor miRNA


Sequence

gauuuagucucuugaagcAAAGUUCUGUGACACUCAGACUcugauuaugauagaagUCAGUGCACUACAGAACUUUGUcuuugggggcuguagcag
(...((((((((.((.(((((((((((((.((((..(((((((.......))).))))))))...))))))))))))).)).))))))))...)..

Structure
-- auu        u  a             --A    CA    -   au 
  g   uagucucu ga gcAAAGUUCUGUG   CACU  GACU cug  u
  |   |||||||| || |||||||||||||   ||||  |||| |||  a
  c   gucggggg uu UGUUUCAAGACAU   GUGA  CUga gau  u
ga gau        u  c             CAC    --    a   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 11448224-11448319 [-]

Database links

Mature cpi-miR-148a-5p

Accession MIMAT0037782
Description Chrysemys picta cpi-miR-148a-5p mature miRNA
Sequence 19 - AAAGUUCUGUGACACUCAGACU - 40
Evidence experimental
Illumina [1]

Mature cpi-miR-148a-3p

Accession MIMAT0037783
Description Chrysemys picta cpi-miR-148a-3p mature miRNA
Sequence 57 - UCAGUGCACUACAGAACUUUGU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196