miRBase entry: cpi-mir-181b-1

Stem-loop cpi-mir-181b-1


Accession
MI0029503
Description
Chrysemys picta cpi-mir-181b-1 precursor miRNA


Sequence

aggucacaaucAACAUUCAUUGCUGUCGGUGGGUUuaacuauguggacaaGCUCACUGAACAAUGAAUGCAacuguggccccac
.(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))))))....

Structure
---a       aucAA         CUG           aa  a 
    ggucaca     CAUUCAUUG   UCGGUGGGUUu  cu u
    |||||||     |||||||||   |||||||||||  ||  
    ccggugu     GUAAGUAAC   AGUCACUCGaa  gg g
cacc       -caAC         --A           ca  u 


Annotation confidence Not enough data
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Genome context
KK088227.1: 2808979-2809062 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-181b-5p

Accession MIMAT0037795
Description Chrysemys picta cpi-miR-181b-5p mature miRNA
Sequence 12 - AACAUUCAUUGCUGUCGGUGGGUU - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-181b-1-3p

Accession MIMAT0037796
Description Chrysemys picta cpi-miR-181b-1-3p mature miRNA
Sequence 51 - GCUCACUGAACAAUGAAUGCA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196