miRBase entry: cpi-mir-196-1

Stem-loop cpi-mir-196-1


Accession
MI0029518
Description
Chrysemys picta cpi-mir-196-1 precursor miRNA


Sequence

gaacuagaacugcuuugugaauUAGGUAGUUUCAUGUUGUUGGGguuuuauuuuuaaacaCAAGAACAUAAAACUACCUGAuuuacuccaguuauucuc
.......(((((....((((((((((((((((.(((((.(((..((((.......)))).))).))))).))))))))))))))))..)))))......

Structure
gaacuag     cuuu                C     G   GG    ua 
       aacug    gugaauUAGGUAGUUU AUGUU UUG  guuu  u
       |||||    |||||||||||||||| ||||| |||  ||||  u
       uugac    cauuuAGUCCAUCAAA UACAA AAC  caaa  u
-cucuua     --cu                A     G   -a    uu 


Annotation confidence Not enough data
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Genome context
KK088207.1: 2530619-2530717 [+]

Database links

Mature cpi-miR-196-5p

Accession MIMAT0037815
Description Chrysemys picta cpi-miR-196-5p mature miRNA
Sequence 23 - UAGGUAGUUUCAUGUUGUUGGG - 44
Evidence experimental
Illumina [1]

Mature cpi-miR-196-3p

Accession MIMAT0037816
Description Chrysemys picta cpi-miR-196-3p mature miRNA
Sequence 61 - CAAGAACAUAAAACUACCUGA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196