miRBase entry: cpi-mir-196-3

Stem-loop cpi-mir-196-3


Accession
MI0029520
Description
Chrysemys picta cpi-mir-196-3 precursor miRNA


Sequence

cugagaacuguucuguaguuUAGGUAGUUUCAUGUUGUUGGGgcuccaccuuucucucugcagcacgaaacugccuuaauuacuucaguugaaaucauc
.....(((((....((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..))))).........

Structure
----cugag     uucu      U          A      U    cucc 
         aacug    guaguu AGGUAGUUUC UGUUGU GGGg    a
         |||||    |||||| |||||||||| |||||| ||||    c
         uugac    cauuaa uccgucaaag acgacg cucu    c
cuacuaaag     --uu      u          c      u    cuuu 


Annotation confidence Not enough data
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Genome context
chr2: 12274641-12274739 [-]

Database links

Mature cpi-miR-196-5p

Accession MIMAT0037815
Description Chrysemys picta cpi-miR-196-5p mature miRNA
Sequence 21 - UAGGUAGUUUCAUGUUGUUGGG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196