miRBase entry: cpi-mir-200a

Stem-loop cpi-mir-200a


Accession
MI0029524
Description
Chrysemys picta cpi-mir-200a precursor miRNA


Sequence

uaugguccucuguggaCAUCUUACUAGACAGUGCUGGAuuuuuuggaucuacucUAACACUGUCUGGUAACGAUGUUuaaagggugaaccaa
..(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).).)))).

Structure
ua    - -    g        -             C    uuuuuu 
  uggu c cucu uggaCAUC UUACUAGACAGUG UGGA      g
  |||| | |||| |||||||| ||||||||||||| ||||       
  acca g ggga auUUGUAG AAUGGUCUGUCAC AUcu      g
-a    a u    a        C             A    caucua 


Annotation confidence Not enough data
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Genome context
chr24: 8886861-8886952 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpi-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-200a-5p

Accession MIMAT0037820
Description Chrysemys picta cpi-miR-200a-5p mature miRNA
Sequence 17 - CAUCUUACUAGACAGUGCUGGA - 38
Evidence experimental
Illumina [1]

Mature cpi-miR-200a-3p

Accession MIMAT0037821
Description Chrysemys picta cpi-miR-200a-3p mature miRNA
Sequence 55 - UAACACUGUCUGGUAACGAUGUU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196