miRBase entry: cpi-mir-204-2

Stem-loop cpi-mir-204-2


Accession
MI0029529
Description
Chrysemys picta cpi-mir-204-2 precursor miRNA


Sequence

gaccaugugaccugugggcUUCCCUUUGUCAUCCUAUGCCUggaguucauagugaggcagggacagcaaagggaugcucaguugucgucuc
(((.....(((...(((((.(((((((((..((((.(((((.............)))))))))..))))))))).)))))...))))))..

Structure
--   caugu   cug     U         CA    A     ggagu 
  gac     gac   ugggc UCCCUUUGU  UCCU UGCCU     u
  |||     |||   ||||| |||||||||  |||| |||||     c
  cug     cug   acucg agggaaacg  aggg acgga     a
cu   -----   uug     u         ac    -     gugau 


Annotation confidence Not enough data
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Genome context
KK088223.1: 6146152-6146242 [-]

Database links

Mature cpi-miR-204-5p

Accession MIMAT0037827
Description Chrysemys picta cpi-miR-204-5p mature miRNA
Sequence 20 - UUCCCUUUGUCAUCCUAUGCCU - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196