miRBase entry: cpi-mir-214

Stem-loop cpi-mir-214


Accession
MI0029537
Description
Chrysemys picta cpi-mir-214 precursor miRNA


Sequence

ggacggaguugucaugugucuGCCUGUCUACACUUGCUGUGCagaacauccucucaccugUACAGCAGGCACAGACAGGCAGucacaugacaacccagcc
((..((.(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).)))))))))))))..))

Structure
  ac  a           u          ACA            aacau 
gg  gg guugucaugug cuGCCUGUCU   CUUGCUGUGCag     c
||  || ||||||||||| ||||||||||   ||||||||||||     c
cc  cc caacaguacac GACGGACAGA   GGACGACAUguc     u
  ga  -           u          CAC            cacuc 


Annotation confidence Not enough data
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Genome context
KK083408.1: 204476-204575 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-214-5p

Accession MIMAT0037839
Description Chrysemys picta cpi-miR-214-5p mature miRNA
Sequence 22 - GCCUGUCUACACUUGCUGUGC - 42
Evidence experimental
Illumina [1]

Mature cpi-miR-214-3p

Accession MIMAT0037840
Description Chrysemys picta cpi-miR-214-3p mature miRNA
Sequence 61 - UACAGCAGGCACAGACAGGCAG - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196