miRBase entry: cpi-mir-363

Stem-loop cpi-mir-363


Accession
MI0029558
Description
Chrysemys picta cpi-mir-363 precursor miRNA


Sequence

uguuuugcuguugucggGUGGAUCACGAUGCAAUUUUGAuuaguuuagcaggagaaaAAUUGCACGGUAUCCAUCUGuaaaccgcaggacc
.(((((((.(((..(((((((((..((.(((((((((..((.((...))..))..)))))))))))..)))))))))..))).))))))).

Structure
u       u   gu         CA  A         GA  -a  u 
 guuuugc guu  cggGUGGAU  CG UGCAAUUUU  uu  gu  
 ||||||| |||  |||||||||  || |||||||||  ||  || u
 caggacg caa  GUCUACCUA  GC ACGUUAAaa  ag  cg  
c       c   au         UG  -         ag  ga  a 


Annotation confidence Not enough data
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Genome context
KK088187.1: 4590949-4591039 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpi-mir-363
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-363-5p

Accession MIMAT0037868
Description Chrysemys picta cpi-miR-363-5p mature miRNA
Sequence 18 - GUGGAUCACGAUGCAAUUUUGA - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-363-3p

Accession MIMAT0037869
Description Chrysemys picta cpi-miR-363-3p mature miRNA
Sequence 58 - AAUUGCACGGUAUCCAUCUG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196