miRBase entry: cpi-mir-875

Stem-loop cpi-mir-875

Accession

MI0029586

Description

Chrysemys picta cpi-mir-875 precursor miRNA

Sequence

guuuagugguacAAUACCUCAGUCUUAUCAGGUguucuauaaauucaccugcaaaaacugagguugaguuucacugaac
(((((((((.((...((((((((.((..((((((...........))))))..)).))))))))...)).)))))))))

Structure

         u  AAU        C  AU      uucu 
guuuagugg ac   ACCUCAGU UU  CAGGUg    a
||||||||| ||   |||||||| ||  ||||||    u
caagucacu ug   uggaguca aa  guccac    a
         u  agu        a  ac      uuaa

Annotation confidence Not enough data

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Genome context

KK082925.1: 9554505-9554583 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-875

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-875-5p

Accession	MIMAT0037909
Description	Chrysemys picta cpi-miR-875-5p mature miRNA
Sequence	13 - AAUACCUCAGUCUUAUCAGGU - 33
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196