miRBase entry: cpi-mir-1306

Stem-loop cpi-mir-1306

Accession

MI0029587

Description

Chrysemys picta cpi-mir-1306 precursor miRNA

Sequence

ugaacagccuccaCCACCUCCCCUGCAAACGUCCAgugacgcagagguaaUGGACGUUGGCUCUGGUGGUGAUggacagucagau
(((....((..(((((((......((.((((((((...((......))..)))))))).))...)))))))..))....)))...

Structure

---   acag  uc       UCCCCU  A        gug  gc 
   uga    cc  caCCACC      GC AACGUCCA   ac  a
   |||    ||  |||||||      || ||||||||   ||   
   acu    gg  GUGGUGG      CG UUGCAGGU   ug  g
uag   gaca  UA       ---UCU  G        -aa  ga

Annotation confidence Not enough data

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Genome context

KK082996.1: 3849507-3849591 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-1306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-1306-5p

Accession	MIMAT0037910
Description	Chrysemys picta cpi-miR-1306-5p mature miRNA
Sequence	14 - CCACCUCCCCUGCAAACGUCCA - 35
Evidence	experimental Illumina [1]

Mature cpi-miR-1306-3p

Accession	MIMAT0037911
Description	Chrysemys picta cpi-miR-1306-3p mature miRNA
Sequence	51 - UGGACGUUGGCUCUGGUGGUGAU - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196