Stem-loop cpi-mir-1677e

Accession

MI0029598

Description

Chrysemys picta cpi-mir-1677e precursor miRNA

Sequence

aaugcucccucuaggcUCUGAUCCAAACCCAUUGAAAucaaaggaaaaaUUCCAAUGGGCUUUGAAUCAGGUccugagugaugccuc
...((((.(((.(((.((((((.(((((((((((.(((..........))).))))))).)))).)))))).)))))).)).))...

Structure

aau  -  c   u   c      C    -       A   caaa 
   gc uc cuc agg UCUGAU CAAA CCCAUUG AAu    g
   || || ||| ||| |||||| |||| ||||||| |||     
   cg ag gag ucc GGACUA GUUU GGGUAAC UUa    g
cuc  u  u   -   U      A    C       C   aaaa 

Annotation confidence Not enough data

Genome context

chr6: 3011703-3011789 [+]

Mature cpi-miR-1677e-5p

• Accession: MIMAT0037928
• Description: Chrysemys picta cpi-miR-1677e-5p mature miRNA
• Sequence: 17 - UCUGAUCCAAACCCAUUGAAA - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1677e-3p

• Accession: MIMAT0037929
• Description: Chrysemys picta cpi-miR-1677e-3p mature miRNA
• Sequence: 50 - UUCCAAUGGGCUUUGAAUCAGGU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196