miRBase entry: cpi-mir-9578

Stem-loop cpi-mir-9578


Accession
MI0029614
Description
Chrysemys picta cpi-mir-9578 precursor miRNA


Sequence

uuguucuguccuguuuUGGGACACAAGCAGAGCAUCUGcaugaccuucucuaccuCAUGCUCUGCCUGUGUCCCAAAauaggcagaacauc
.(((((((.((((((((((((((((.(((((((((..(...((.....))...)..))))))))).)))))))))))))))))))))))..

Structure
-u       u                A         CU cau  c 
  uguucug ccuguuuUGGGACACA GCAGAGCAU  G   ga c
  ||||||| |||||||||||||||| |||||||||  |   || u
  acaagac ggauaAAACCCUGUGU CGUCUCGUA  c   cu u
cu       -                C         Cu cau  c 


Annotation confidence Not enough data
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Genome context
KK082990.1: 122242-122332 [+]

Database links

Mature cpi-miR-9578-5p

Accession MIMAT0037950
Description Chrysemys picta cpi-miR-9578-5p mature miRNA
Sequence 17 - UGGGACACAAGCAGAGCAUCUG - 38
Evidence experimental
Illumina [1]

Mature cpi-miR-9578-3p

Accession MIMAT0037951
Description Chrysemys picta cpi-miR-9578-3p mature miRNA
Sequence 56 - CAUGCUCUGCCUGUGUCCCAAA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196