miRBase entry: cpi-mir-9579

Stem-loop cpi-mir-9579


Accession
MI0029615
Description
Chrysemys picta cpi-mir-9579 precursor miRNA


Sequence

ugugguagugauggugAAAGUGCUAGCGUAGAAACGGcagaugcuuuucaugCUCUCUUUGCUAGCGCUUCCAccaagguuaccacu
.((((((((..(((((.(((((((((((.(((...((((((......)).)))).))).))))))))))).)))))..)))))))).

Structure
u        ga     A           U   AAC    -  ug 
 gugguagu  uggug AAGUGCUAGCG AGA   GGca ga  c
 ||||||||  ||||| ||||||||||| |||   |||| ||   
 caccauug  accAC UUCGCGAUCGU UCU   UCgu cu  u
u        ga     C           U   --C    a  uu 


Annotation confidence Not enough data
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Genome context
chr22: 1611299-1611385 [+]

Database links

Mature cpi-miR-9579-5p

Accession MIMAT0037952
Description Chrysemys picta cpi-miR-9579-5p mature miRNA
Sequence 17 - AAAGUGCUAGCGUAGAAACGG - 37
Evidence experimental
Illumina [1]

Mature cpi-miR-9579-3p

Accession MIMAT0037953
Description Chrysemys picta cpi-miR-9579-3p mature miRNA
Sequence 53 - CUCUCUUUGCUAGCGCUUCCA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196