miRBase entry: cpi-mir-9585

Stem-loop cpi-mir-9585


Accession
MI0029622
Description
Chrysemys picta cpi-mir-9585 precursor miRNA


Sequence

cuccggaguuggggCACCGAUCGUUGGCGACUCAGGcuccuccaugggagcaguacccUGAGUCGCCAACAAUCGGUGCCucaacucggagaccu
(((((.(((((((((((((((.((((((((((((((((.((((...)))).))...)))))))))))))).))))))))))))))))))))....

Structure
----     g               C              ---  c    a 
    cuccg aguuggggCACCGAU GUUGGCGACUCAGG   cu cucc  
    ||||| ||||||||||||||| ||||||||||||||   || |||| u
    gaggc ucaacuCCGUGGCUA CAACCGCUGAGUcc   ga gagg  
ucca     -               A              cau  c    g 


Annotation confidence Not enough data
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Genome context
chr2: 20574021-20574115 [-]

Database links

Mature cpi-miR-9585-5p

Accession MIMAT0037966
Description Chrysemys picta cpi-miR-9585-5p mature miRNA
Sequence 15 - CACCGAUCGUUGGCGACUCAGG - 36
Evidence experimental
Illumina [1]

Mature cpi-miR-9585-3p

Accession MIMAT0037967
Description Chrysemys picta cpi-miR-9585-3p mature miRNA
Sequence 59 - UGAGUCGCCAACAAUCGGUGCC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196