miRBase entry: ami-let-7c-1

Stem-loop ami-let-7c-1


Accession
MI0029644
Description
Alligator mississippiensis ami-let-7c-1 precursor miRNA


Sequence

ugugugcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcacacu
.((((((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..)))))))))))).

Structure
u      a      uU   G   U             ua  g ua  c 
 gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
 |||||| ||||||  ||| ||| |||||||||||||  || |  || c
 cacacg agguuC  UUC AUC UCCAACAUGUCaa  uu a  gu  
u      -      CU   G   U             --  g gg  c 


Annotation confidence Not enough data
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Genome context
AKHW03006231.1: 37235551-37235644 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-let-7c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-let-7c-5p

Accession MIMAT0038005
Description Alligator mississippiensis ami-let-7c-5p mature miRNA
Sequence 16 - UGAGGUAGUAGGUUGUAUGGUU - 37
Evidence experimental
Illumina [1]

Mature ami-let-7c-3p

Accession MIMAT0038006
Description Alligator mississippiensis ami-let-7c-3p mature miRNA
Sequence 61 - CUGUACAACCUUCUAGCUUUCC - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196