miRBase entry: ami-let-7d

Stem-loop ami-let-7d

Accession

MI0029646

Description

Alligator mississippiensis ami-let-7d precursor miRNA

Sequence

uaggaAGAGGUAGUAGGUUGCAUAGuuuuagggcagggauuuugcucacacggaguuaaCUAUACAACCUGCUGCCUUUCuuagggc
(((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))....

Structure

----     A              C      -------uua      g 
    uagga GAGGUAGUAGGUUG AUAGuu          gggcag g
    ||||| |||||||||||||| ||||||          |||||| a
    auuCU UUCCGUCGUCCAAC UAUCaa          cucguu u
cggg     -              A      uugaggcaca      u

Annotation confidence Not enough data

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Genome context

AKHW03004488.1: 7300952-7301038 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-let-7d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-let-7d-5p

Accession	MIMAT0038008
Description	Alligator mississippiensis ami-let-7d-5p mature miRNA
Sequence	6 - AGAGGUAGUAGGUUGCAUAG - 25
Evidence	experimental Illumina [1]

Mature ami-let-7d-3p

Accession	MIMAT0038009
Description	Alligator mississippiensis ami-let-7d-3p mature miRNA
Sequence	60 - CUAUACAACCUGCUGCCUUUC - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196