miRBase entry: ami-mir-1a-1

Stem-loop ami-mir-1a-1


Accession
MI0029652
Description
Alligator mississippiensis ami-mir-1a-1 precursor miRNA


Sequence

gaaacuaccugcuugagagACAUACUUCUUUAUAUGCCCAUAUgaaccuggcaagcuaUGGAAUGUAAAGAAGUAUGUAUuucagguggggaucauucu
(((....(((((((((((.((((((((((((((((..(((((..............))))).)))))))))))))))).))))))))))).....))).

Structure
-   -acua           g                GC     Ugaacc 
 gaa     ccugcuugaga ACAUACUUCUUUAUAU  CCAUA      u
 |||     ||||||||||| ||||||||||||||||  |||||       
 cuu     ggguggacuuU UGUAUGAAGAAAUGUA  GGUau      g
u   acuag           A                -A     cgaacg 


Annotation confidence Not enough data
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Genome context
AKHW03001485.1: 1710007-1710105 [-]

Database links

Mature ami-miR-1a-5p

Accession MIMAT0038018
Description Alligator mississippiensis ami-miR-1a-5p mature miRNA
Sequence 20 - ACAUACUUCUUUAUAUGCCCAUAU - 43
Evidence experimental
Illumina [1]

Mature ami-miR-1a-3p

Accession MIMAT0038019
Description Alligator mississippiensis ami-miR-1a-3p mature miRNA
Sequence 59 - UGGAAUGUAAAGAAGUAUGUAU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196