miRBase entry: ami-mir-1a-2

Stem-loop ami-mir-1a-2


Accession
MI0029653
Description
Alligator mississippiensis ami-mir-1a-2 precursor miRNA


Sequence

accugcccagaguACAUACUUCUUUAUGUACCCAUAugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuuggcaggcac
.((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).))))))...

Structure
--a      c                     AC     ug aca 
   ccugcc agaguACAUACUUCUUUAUGU  CCAUA  a   u
   |||||| |||||||||||||||||||||  |||||  |    
   ggacgg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
cac      u                     -A     cg aac 


Annotation confidence Not enough data
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Genome context
AKHW03000230.1: 130792-130878 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-1a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-1a-3p

Accession MIMAT0038019
Description Alligator mississippiensis ami-miR-1a-3p mature miRNA
Sequence 53 - UGGAAUGUAAAGAAGUAUGUAU - 74
Evidence experimental
Illumina [1]

Mature ami-miR-1a-2-5p

Accession MIMAT0038020
Description Alligator mississippiensis ami-miR-1a-2-5p mature miRNA
Sequence 14 - ACAUACUUCUUUAUGUACCCAUA - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196