miRBase entry: ami-mir-9-1

Stem-loop ami-mir-9-1


Accession
MI0029659
Description
Alligator mississippiensis ami-mir-9-1 precursor miRNA


Sequence

ggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGaguggugucaauucuucaUAAAGCUAGAUAACCGAAAGUaaaaauaaccccau
((((((....((((.(((((((((((((((.((((((.(((....))).)))))).))))))))))))))).))))...))))))...

Structure
---      guug    C               G      u   g 
   ggguug    uuaU UUUGGUUAUCUAGCU UAUGag ggu u
   ||||||    |||| ||||||||||||||| |||||| |||  
   cccaau    aaUG AAGCCAAUAGAUCGA AUacuu uua c
uac      -aaa    A               A      c   a 


Annotation confidence Not enough data
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Genome context
AKHW03001603.1: 781209-781296 [+]

Database links

Mature ami-miR-9-5p

Accession MIMAT0038027
Description Alligator mississippiensis ami-miR-9-5p mature miRNA
Sequence 14 - UCUUUGGUUAUCUAGCUGUAUG - 35
Evidence experimental
Illumina [1]

Mature ami-miR-9-3p

Accession MIMAT0038028
Description Alligator mississippiensis ami-miR-9-3p mature miRNA
Sequence 54 - UAAAGCUAGAUAACCGAAAGU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196