miRBase entry: ami-mir-9-2

Stem-loop ami-mir-9-2


Accession
MI0029660
Description
Alligator mississippiensis ami-mir-9-2 precursor miRNA


Sequence

gaagcgaguuguuaUCUUUGGUUAUCUAGCUGUAUGaguguuuuggucuucaUAAAGCUAGAUAACCGAAAGUaaaaacuccuuca
((((.(((((.((((.(((((((((((((((.((((((.(.......))))))).))))))))))))))).)))).))))))))).

Structure
-    c     g    C               G      u uu 
 gaag gaguu uuaU UUUGGUUAUCUAGCU UAUGag g  u
 |||| ||||| |||| ||||||||||||||| |||||| |  u
 cuuc cucaa aaUG AAGCCAAUAGAUCGA AUacuu c  g
a    -     a    A               A      - ug 


Annotation confidence Not enough data
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Genome context
AKHW03000179.1: 13620882-13620967 [-]

Database links

Mature ami-miR-9-5p

Accession MIMAT0038027
Description Alligator mississippiensis ami-miR-9-5p mature miRNA
Sequence 15 - UCUUUGGUUAUCUAGCUGUAUG - 36
Evidence experimental
Illumina [1]

Mature ami-miR-9-3p

Accession MIMAT0038028
Description Alligator mississippiensis ami-miR-9-3p mature miRNA
Sequence 53 - UAAAGCUAGAUAACCGAAAGU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196