miRBase entry: ami-mir-9-3

Stem-loop ami-mir-9-3


Accession
MI0029661
Description
Alligator mississippiensis ami-mir-9-3 precursor miRNA


Sequence

agggcuguuucugUCUUUGGUUAUCUAGCUGUAUGaguguucucgagccgucaUAAAGCUAGAUAACCGAAAGUagaaaugacuu
.(((.((((((((.((((((((((((((((.(((((..(((....)))..))))).)))))))))))).)))))))))))).)))

Structure
a   c        U    -            G     gu   c 
 ggg uguuucug CUUU GGUUAUCUAGCU UAUGa  guu u
 ||| |||||||| |||| |||||||||||| |||||  |||  
 uuc guaaagaU GAAA CCAAUAGAUCGA AUacu  cga c
-   a        -    G            A     gc   g 


Annotation confidence Not enough data
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Genome context
AKHW03006295.1: 12355216-12355300 [+]

Database links

Mature ami-miR-9-5p

Accession MIMAT0038027
Description Alligator mississippiensis ami-miR-9-5p mature miRNA
Sequence 14 - UCUUUGGUUAUCUAGCUGUAUG - 35
Evidence experimental
Illumina [1]

Mature ami-miR-9-3p

Accession MIMAT0038028
Description Alligator mississippiensis ami-miR-9-3p mature miRNA
Sequence 54 - UAAAGCUAGAUAACCGAAAGU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196