miRBase entry: ami-mir-15a

Stem-loop ami-mir-15a


Accession
MI0029666
Description
Alligator mississippiensis ami-mir-15a precursor miRNA


Sequence

uaccuuggccuaacgUAGCAGCACAUAAUGGUUUGUGgauuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCaaaaauac
..............(..((((((((..((((((((((.............))))))))))..))))))))..)........

Structure
uaccuuggccuaac UA        UA          gauuu 
              g  GCAGCACA  AUGGUUUGUG     u
              |  ||||||||  ||||||||||     g
              C  CGUCGUGU  UACCGGACgu     a
------cauaaaaa UC        UA          ggaaa 


Annotation confidence Not enough data
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Genome context
AKHW03003532.1: 3751616-3751696 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-15a-5p

Accession MIMAT0038036
Description Alligator mississippiensis ami-miR-15a-5p mature miRNA
Sequence 16 - UAGCAGCACAUAAUGGUUUGUG - 37
Evidence experimental
Illumina [1]

Mature ami-miR-15a-3p

Accession MIMAT0038037
Description Alligator mississippiensis ami-miR-15a-3p mature miRNA
Sequence 53 - CAGGCCAUAUUGUGCUGCCUC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196