miRBase entry: ami-mir-15c

Stem-loop ami-mir-15c


Accession
MI0029668
Description
Alligator mississippiensis ami-mir-15c precursor miRNA


Sequence

cuuugaggagaugUAGCAGCACAUCAUGGUUUGUAgggacaaggagauaCAGACCAUUCUGGGCUGCCUCAUUaccucaagg
((((((((.((((..(((((.((..((((((((((............))))))))))..)).)))))..)))).))))))))

Structure
        a    UA     A  UC          gggac 
cuuugagg gaug  GCAGC CA  AUGGUUUGUA     a
|||||||| ||||  ||||| ||  ||||||||||      
ggaacucc UUAC  CGUCG GU  UACCAGACau     a
        a    UC     G  CU          agagg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03003879.1: 2725258-2725339 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-15c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-15c-5p

Accession MIMAT0038040
Description Alligator mississippiensis ami-miR-15c-5p mature miRNA
Sequence 14 - UAGCAGCACAUCAUGGUUUGUA - 35
Evidence experimental
Illumina [1]

Mature ami-miR-15c-3p

Accession MIMAT0038041
Description Alligator mississippiensis ami-miR-15c-3p mature miRNA
Sequence 50 - CAGACCAUUCUGGGCUGCCUCAUU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196