miRBase entry: ami-mir-17

Stem-loop ami-mir-17


Accession
MI0029672
Description
Alligator mississippiensis ami-mir-17 precursor miRNA


Sequence

gucagaguaauguCAAAGUGCUUACAGUGCAGGUAGugauauauagaaccuaCUGCAGUGAAGGCACUUGUAGCauuauagugacaa
((((..(((((((..((((((((.((.(((((...((..........))...))))).)).))))))))...)))))))..))))..

Structure
--    ga       -CA        A  G     GUA  gaua 
  guca  guaaugu   AAGUGCUU CA UGCAG   Gu    u
  ||||  |||||||   |||||||| || |||||   ||     
  cagu  uauuaCG   UUCACGGA GU ACGUC   ca    a
aa    ga       AUG        A  G     auc  agau 


Annotation confidence Not enough data
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Genome context
AKHW03002195.1: 10810742-10810828 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ami-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-17-5p

Accession MIMAT0038047
Description Alligator mississippiensis ami-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAG - 36
Evidence experimental
Illumina [1]

Mature ami-miR-17-3p

Accession MIMAT0038048
Description Alligator mississippiensis ami-miR-17-3p mature miRNA
Sequence 53 - CUGCAGUGAAGGCACUUGUAGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196