miRBase entry: ami-mir-24-2

Stem-loop ami-mir-24-2

Accession

MI0029681

Description

Alligator mississippiensis ami-mir-24-2 precursor miRNA

Sequence

ucugggcccugccuccgGUGCCUACUGAGCUGAUACUCAguugcuuugguuuaaacUGGCUCAGUUCAGCAGGAACAGgagucuggcuccagcu
.(((((((..(.((((.((.(((.(((((((((...((((((...........)))))).))))))))).))).)).)))).).))).))))..

Structure

-u    -   cu c    g  G   A         UAC      gcuu 
  cugg gcc  g cucc GU CCU CUGAGCUGA   UCAguu    u
  |||| |||  | |||| || ||| |||||||||   ||||||    g
  gacc cgg  c gagG CA GGA GACUUGACU   GGUcaa    g
uc    u   -u u    A  A   C         --C      auuu

Annotation confidence Not enough data

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Genome context

AKHW03005909.1: 200842-200935 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-24-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-24-3p

Accession	MIMAT0038062
Description	Alligator mississippiensis ami-miR-24-3p mature miRNA
Sequence	57 - UGGCUCAGUUCAGCAGGAACAG - 78
Evidence	experimental Illumina [1]

Mature ami-miR-24-2-5p

Accession	MIMAT0038063
Description	Alligator mississippiensis ami-miR-24-2-5p mature miRNA
Sequence	18 - GUGCCUACUGAGCUGAUACUCA - 39
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196