miRBase entry: ami-mir-26-1

Stem-loop ami-mir-26-1


Accession
MI0029682
Description
Alligator mississippiensis ami-mir-26-1 precursor miRNA


Sequence

aaggcuguuaccuggUUCAAGUAAUCCAGGAUAGGCUguaugcauugcaguuggCCUAUUCUUGAUUACUUGCACUgggagacagccaca
..(((((((.((((((.(((((((((.(((((((((((..(((...)))..))))))))))).))))))))).)))))).)))))))...

Structure
-aa       a      U         C           ua   a 
   ggcuguu ccuggU CAAGUAAUC AGGAUAGGCUg  ugc  
   ||||||| |||||| ||||||||| |||||||||||  ||| u
   ccgacag gggUCA GUUCAUUAG UCUUAUCCggu  acg  
aca       a      C         U           ug   u 


Annotation confidence Not enough data
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Genome context
AKHW03000487.1: 27325040-27325129 [-]

Database links

Mature ami-miR-26-5p

Accession MIMAT0038064
Description Alligator mississippiensis ami-miR-26-5p mature miRNA
Sequence 16 - UUCAAGUAAUCCAGGAUAGGCU - 37
Evidence experimental
Illumina [1]

Mature ami-miR-26-3p

Accession MIMAT0038065
Description Alligator mississippiensis ami-miR-26-3p mature miRNA
Sequence 55 - CCUAUUCUUGAUUACUUGCACU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196