miRBase entry: ami-mir-27a

Stem-loop ami-mir-27a


Accession
MI0029684
Description
Alligator mississippiensis ami-mir-27a precursor miRNA


Sequence

gaagccagggcacAGGGCUUAGCUCACCUGUGAACAgaguuagcguugcaucaugUUCACAGUGGCUAAGUUCCGCcuccuggugucua
((.(((((((..(.(((((((((.(((.((((((((((((.......)).)).)))))))))))))))))))).)..))))))).))..

Structure
--  a       ca A         U   C        -  -  ua 
  ga gccaggg  c GGGCUUAGC CAC UGUGAACA ga gu  g
  || |||||||  | ||||||||| ||| |||||||| || ||  c
  cu ugguccu  G CUUGAAUCG GUG ACACUUgu cu cg  g
au  g       cC C         -   -        a  a  uu 


Annotation confidence Not enough data
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Genome context
AKHW03005909.1: 200571-200659 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-27a-5p

Accession MIMAT0038067
Description Alligator mississippiensis ami-miR-27a-5p mature miRNA
Sequence 14 - AGGGCUUAGCUCACCUGUGAACA - 36
Evidence experimental
Illumina [1]

Mature ami-miR-27a-3p

Accession MIMAT0038068
Description Alligator mississippiensis ami-miR-27a-3p mature miRNA
Sequence 56 - UUCACAGUGGCUAAGUUCCGC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196