miRBase entry: ami-mir-29b-2

Stem-loop ami-mir-29b-2


Accession
MI0029689
Description
Alligator mississippiensis ami-mir-29b-2 precursor miRNA


Sequence

ugagucuuccucuggaagCUGGUUUCACAUGGUGGCUUAGAuuuucccaucuuuguaucUAGCACCAUUUGAAAUCAGUGuucuaggggcaagaauua
....(((((((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))))))).))))....

Structure
ugag    -         -          C      G  U    uuuccc 
    ucuu ccucuggaa gCUGGUUUCA AUGGUG CU AGAu      a
    |||| ||||||||| |||||||||| |||||| || ||||       
    agaa ggggaucuu UGACUAAAGU UACCAC GA Ucua      u
auua    c         G          U      -  -    uguuuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03006004.1: 1060946-1061043 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-29b-3p

Accession MIMAT0038075
Description Alligator mississippiensis ami-miR-29b-3p mature miRNA
Sequence 60 - UAGCACCAUUUGAAAUCAGUG - 80
Evidence experimental
Illumina [1]

Mature ami-miR-29b-2-5p

Accession MIMAT0038076
Description Alligator mississippiensis ami-miR-29b-2-5p mature miRNA
Sequence 19 - CUGGUUUCACAUGGUGGCUUAGA - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196