miRBase entry: ami-mir-30b

Stem-loop ami-mir-30b


Accession
MI0029691
Description
Alligator mississippiensis ami-mir-30b precursor miRNA


Sequence

acugacuuuuaguucaUGUAAACAUCCUACACUCAGCUauaacaacuggaacggCUGGGAGGUGGAUGUUUACUUCaacugauuugaaaagg
........((((((...((((((((((.((.(((((((.(..(....)..).)))))))..))))))))))))...))))))..........

Structure
--acugacuu      caU          U  -A       a aa a 
          uuaguu   GUAAACAUCC AC  CUCAGCU u  c a
          ||||||   |||||||||| ||  ||||||| |  |  
          agucaa   CAUUUGUAGG UG  GGGUCgg a  g c
ggaaaaguuu      CUU          -  GA       c ag u 


Annotation confidence Not enough data
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Genome context
AKHW03000629.1: 6765014-6765105 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-30b-5p

Accession MIMAT0038079
Description Alligator mississippiensis ami-miR-30b-5p mature miRNA
Sequence 17 - UGUAAACAUCCUACACUCAGCU - 38
Evidence experimental
Illumina [1]

Mature ami-miR-30b-3p

Accession MIMAT0038080
Description Alligator mississippiensis ami-miR-30b-3p mature miRNA
Sequence 55 - CUGGGAGGUGGAUGUUUACUUC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196