miRBase entry: ami-mir-30c-2

Stem-loop ami-mir-30c-2


Accession
MI0029693
Description
Alligator mississippiensis ami-mir-30c-2 precursor miRNA


Sequence

gcucugagugacagguauUGUAAACAUCCUACACUCUCAGCuguggaaaaugaggaagcUGGGAGAAGGCUGUUUACUCUcccugacuuagauagc
..(((((((..((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))))))))))....

Structure
--gc       ga    uauU       U   ACA         guggaa 
    ucugagu  cagg    GUAAACA CCU   CUCUCAGCu      a
    |||||||  ||||    ||||||| |||   |||||||||       
    agauuca  gucc    CAUUUGU GGA   GAGGGUcga      a
cgau       --    cUCU       C   --A         aggagu 


Annotation confidence Not enough data
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Genome context
AKHW03000483.1: 1500928-1501023 [+]

Database links

Mature ami-miR-30c-5p

Accession MIMAT0038081
Description Alligator mississippiensis ami-miR-30c-5p mature miRNA
Sequence 19 - UGUAAACAUCCUACACUCUCAGC - 41
Evidence experimental
Illumina [1]

Mature ami-miR-30c-2-3p

Accession MIMAT0038083
Description Alligator mississippiensis ami-miR-30c-2-3p mature miRNA
Sequence 60 - UGGGAGAAGGCUGUUUACUCU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196