miRBase entry: ami-mir-30e

Stem-loop ami-mir-30e


Accession
MI0029695
Description
Alligator mississippiensis ami-mir-30e precursor miRNA


Sequence

ccugggcagucgaugcuacUGUAAACAUCCUUGACUGGAAGCUguaaggugcuagaaggagCUUUCAGUCGGAUGUUUACAGCggcaggcugccacaguc
.((((((((((..((((.((((((((((((..(((((((((((................))))))))))))))))))))))).))))))))))).)))..

Structure
-c   -       ga    a            UU           guaaggu 
  cug ggcaguc  ugcu cUGUAAACAUCC  GACUGGAAGCU       g
  ||| |||||||  |||| ||||||||||||  |||||||||||        
  gac ccgucgg  acgg GACAUUUGUAGG  CUGACUUUCga       c
cu   a       --    C            --           ggaagau 


Annotation confidence Not enough data
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Genome context
AKHW03000257.1: 135207-135306 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-30e-5p

Accession MIMAT0038086
Description Alligator mississippiensis ami-miR-30e-5p mature miRNA
Sequence 20 - UGUAAACAUCCUUGACUGGAAGCU - 43
Evidence experimental
Illumina [1]

Mature ami-miR-30e-3p

Accession MIMAT0038087
Description Alligator mississippiensis ami-miR-30e-3p mature miRNA
Sequence 62 - CUUUCAGUCGGAUGUUUACAGC - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196