miRBase entry: ami-mir-33-1

Stem-loop ami-mir-33-1


Accession
MI0029698
Description
Alligator mississippiensis ami-mir-33-1 precursor miRNA


Sequence

gggugaccgcuguaGUGCAUUGUAGUUGCAUUGCAuguucugguaguaucugugCAAUGUUUCUGCAGUGCAGUAuagaggcacucu
(((((.((.(((((.((((((((((..(((((((((...............)))))))))..)))))))))).))))).))))))).

Structure
-     a  g     G          UU         guucug 
 gggug cc cugua UGCAUUGUAG  GCAUUGCAu      g
 ||||| || ||||| ||||||||||  |||||||||      u
 cucac gg gauAU ACGUGACGUC  UGUAACgug      a
u     -  a     G          UU         ucuaug 


Annotation confidence Not enough data
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Genome context
AKHW03002956.1: 945267-945353 [-]

Database links

Mature ami-miR-33-5p

Accession MIMAT0038092
Description Alligator mississippiensis ami-miR-33-5p mature miRNA
Sequence 15 - GUGCAUUGUAGUUGCAUUGCA - 35
Evidence experimental
Illumina [1]

Mature ami-miR-33-3p

Accession MIMAT0038093
Description Alligator mississippiensis ami-miR-33-3p mature miRNA
Sequence 55 - CAAUGUUUCUGCAGUGCAGUA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196