miRBase entry: ami-mir-92a

Stem-loop ami-mir-92a


Accession
MI0029703
Description
Alligator mississippiensis ami-mir-92a precursor miRNA


Sequence

accccuuucuacacAGGUUGGGAUCAGUUGCAAUGCUgugugugucuguggUAUUGCACUUGUCCCGGCCUGUugagguugguggggaua
.((((..(((..((((((((((((.(((.((((((((............))))))))))).))))))))))))..))).....))))...

Structure
--a    ---uu   ac            C   U        gugug 
   cccc     ucu  acAGGUUGGGAU AGU GCAAUGCU     u
   ||||     |||  |||||||||||| ||| ||||||||      
   gggg     gga  UGUCCGGCCCUG UCA CGUUAUgg     g
aua    ugguu   gu            U   -        ugucu 


Annotation confidence Not enough data
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Genome context
AKHW03002195.1: 10809989-10810078 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ami-mir-92a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-92a-5p

Accession MIMAT0038101
Description Alligator mississippiensis ami-miR-92a-5p mature miRNA
Sequence 15 - AGGUUGGGAUCAGUUGCAAUGCU - 37
Evidence experimental
Illumina [1]

Mature ami-miR-92a-3p

Accession MIMAT0038102
Description Alligator mississippiensis ami-miR-92a-3p mature miRNA
Sequence 52 - UAUUGCACUUGUCCCGGCCUGU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196